Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs4694170 chr4:74373060 A/C 0.000133 494 24.87 31.08 31.37 KM Plot
PRAD rs473142 chr8:104004506 A/G 0.000181 488 31.13 28.93 16.58 KM Plot
PRAD rs473152 chr8:104004513 A/C 0.000181 488 31.13 28.93 16.58 KM Plot
PRAD rs4759380 chr12:3130938 A/G 0.000177 475 27.32 30.27 30.85 KM Plot
PRAD rs4776964 chr15:68016955 T/G 4.38E-5 493 33.42 27.77 27.58 KM Plot
PRAD rs4776982 chr15:68114974 C/T 9.95E-5 494 26.37 28.05 33.37 KM Plot
PRAD rs4776984 chr15:68118194 A/C 0.00016 492 33.37 28.23 25.67 KM Plot
PRAD rs4779068 chr15:83494901 A/G 0.000136 494 29.17 35.77 30.23 KM Plot
PRAD rs4779069 chr15:83505262 T/C 3.11E-6 491 30.23 35.57 29.08 KM Plot
PRAD rs4796801 chr17:76867892 C/T 6.4E-8 473 18.93 33.07 30.87 KM Plot
PRAD rs4801455 chr19:57783377 G/T 1.92E-6 493 26.37 30.57 31.27 KM Plot
PRAD rs4802612 chr19:49989750 A/G 4.36E-5 486 30.33 33.3 26.8 KM Plot
PRAD rs4802613 chr19:49999880 C/T 1.94E-6 485 30.77 32.98 26.47 KM Plot
PRAD rs480341 chr11:71566621 G/A 3.73E-5 488 31.32 26.58 28.88 KM Plot
PRAD rs4814983 chr20:2117462 C/T 8.9E-8 490 28.67 33.6 26.78 KM Plot